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Create dynamic data visualizations in the social, physical, and computer sciences with the Circos data visualization program.
- Transform simple tables into engaging diagrams
- Learn to install Circos on Windows, Linux, and MacOS
- Create Circos diagrams using ribbons, heatmaps, and other data tracks
In Detail
Companies, non-profit organizations, and governments are collecting a large amount of data. Analysts and graphic designers are faced with a challenge of conveying data to a wide audience. This book introduces Circos, a creative program to display tables in an engaging visualization.
Readers will learn how to install, create, and customize Circos diagrams using real-life examples from the social sciences.
"Circos Data Visualization How-To" is a friendly, hands-on guide to creating diagrams with step-by-step instructions. Although Circos was originally created for genetic research, this book emphasizes using Circos in the social sciences. We will walk through the process to install, create, and customize diagrams.
The book provides step-by-step instructions to installing Circos on your computer, transforming data sets to use in Circos, and creating diagrams in the social sciences.
You will learn how to transform ordinary tables into engaging diagrams. We will walk through the installation process on Windows, Linux, and Mac OS. We will also learn how to transform raw data into a Circos-friendly format. The book is written as a friendly, hands-on guide so new users can walk through the installation and diagram-creation process.
Readers will understand how to create Circos diagrams, from organizing data through to creating diagrams.
What you will learn from this book
- This book is targeted to data visualization enthusiasts from all backgrounds
- Installing Circos on Windows, Linux, and Mac OS
- Organizing data to use with Circos
- Creating links and ribbons to visualize data in Circos
- Customize the format of Circos diagrams
- How to use Circos data tracks
- Apply Circos diagrams for use in the social sciences
- Format Circos diagrams with automatic rules
Approach
Recipes that follow a problem-solution approach. It's a friendly, hands-on guide to creating visualizations with step-by-step instructions.
Who this book is written for
This book is targeted at statisticians, analysts, and graphic designers with an interest in data visualization. The author does not presume any experience with Circos and steps through the installation and diagram creation process.
- Sales Rank: #3808637 in Books
- Published on: 2012-11-23
- Released on: 2012-11-23
- Original language: English
- Number of items: 1
- Dimensions: 9.25" h x .17" w x 7.50" l, .31 pounds
- Binding: Paperback
- 72 pages
About the Author
Tom Schenk Jr.
Tom Schenk Jr. is the Director of Analytics for the city of Chicago. He also maintains the Data Nouveau website at www.datanouveau.net. Tom has written numerous scholarly articles on data visualization, education, and economic research. He has emphasized the use of data visualization techniques in governmental reports. Previously, he was an Educational Consultant for the Iowa Department of Education and Senior Analyst at Department of Medical Social Sciences at Northwestern University.
Most helpful customer reviews
0 of 0 people found the following review helpful.
Nice Basic Introduction - Need some update on examples
By ping
Circos is a very powerful visualization tool. This book provide an introduction about how to use circos for the beginners. It is a easy read, especially for the window users. But when you start to run the examples, there are some problems which might need readers to explore a little bit more to find answer ( I found the google group discussion is really useful):
(1) This book is use circus 0.62-1, there are newer versions. especially for later examples, you need to switch _SIZE1_ to var(size1); _color_ to var(color) to make the example to work.
(2) Graphics::ColorObject need to be installed through cpan for both window and linux system
(3) Some linux user might need to add a soft link "sudo ln -s /usr/bin/env /bin/env" to make the example work
(4) If you use newer version, you need to define the following parameters in the first example:
auto_alpha_colors=yes
auto_alpha_steps=5
(5)page 30 the parameter is chromosomes_order not chromosome_order. Generally use the code come together with the book as the starting place will help reader avoid any typo on the book.
Overall I enjoy the read and found this tool to be really powerful. It interested me to follow up a little deeper on the tutorials and course on the web.
Here is the link to the ebook version:
[...]
I do hope that the author can summarize at the beginning about all the possible type of graphs this tool can generate and what is the biggest advantages in using this type of graph than the traditional type of graph. The example are nice, but take some time for me to realize the real power of this tool.
Ping
0 of 0 people found the following review helpful.
Nice examples but leaves Mac users behind
By deanna.church
Circos is a great data visualization tool that provides novel ways to view data. Initially developed for genomics applications, there are several great examples of using circos to display non-genomics data. While this book provides some nice examples of how to use circos for data visualization, I fear it will miss the mark for the intended audience, especially Mac users. In the preface, Mr. Shenk states two goals:
1. To make circos available to a broad audience (which I read to mean non-programmer)
2. To show how circos can be used in the social sciences
While the example chosen by Mr. Shank is good, which is introduced in the second chapter, I fear many users (at least those on a Mac) will never get that far. Mr. Shank provides detailed instructions for installing Perl and circos on a windows machine (which I did not try) but provides one set of instructions for installing circos on a Linux or Mac. While it is correct that the Mac OSX comes installed with Perl, it is not the standard installation that is found on most Linux machines. Following the instructions in the text will not get circos running on your Mac (for that, read this great how-to: [...] ). I suspect most novices on a Mac will stop when they can't actually get circos running.
Once I got circos running on my machine (using documentation and examples from the web) I still had difficulty actually running the examples in the book. Some files were missing from the example files distributed with the book, and in general the examples tend to be focused on Windows users.
There is really very good documentation for installing and creating circos diagrams on the web. The best thing this book provides are example text files for creating diagrams using non-genomics data. If you are a Mac user and want access to that, be prepared to do a fair bit of trouble shooting on your own (or with your favorite search engine).
0 of 0 people found the following review helpful.
good starting book for learning circos
By HuyVuong
As someone who is intrigued by the powerful visualization tool of Circos, it's almost impossible to find a book on the topic. Finally, Tom Schenk has written a book to fill in a much needed gap. The book guides you through the installation, configuration and provides with some basic examples. Circos itself is implemented in Perl, so if you are familiar with the language, it is very straightforward to install in any platforms. I wish the book explains more about the many settings included in configuration text files and provides more examples in bioinformatics field. Overall, the book is a good place to start for learning Circos and really does a good job in explaining the basics working on Circos. After that, you would have to explore more on Circos website and its community resource.
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